I have used the Batch Convert script to package the files.
I do need a PDF stored with the files - ideally an "Internal Proof" folder.
Now, the Batch Convert script can scan all the folders and make a PDF - but it puts the PDFs in the Root folder at 2014.
To put it in perspective, I have over 5,000 files to create a PDF for. I really don't want to do it manually. I really need the PDF stored with the jobs.